noone@mail.com Analysis of Dieting study 16S data % Fri Sep 7 05:46:18 2018

(1.3.1.2.4) Plots of Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'.

Plots are shown with relation to various combinations of meta data variables and in different graphical representations. Lots of plots here.

(1.3.1.2.4.2) Iterating over all combinations of grouping variables
(1.3.1.2.4.2.1) Entire pool of samples
(1.3.1.2.4.2.2) Iterating over Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. profile sorting order
(1.3.1.2.4.2.2.1) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. profile sorting order: GeneSelector paired test ranking
(1.3.1.2.4.2.2.2) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.3.1.2.4.2.2.2.1) faceted plots. Iterating over orientation and, optionally, scaling
(1.3.1.2.4.2.2.2.1.1) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.3.1.2.4.2.2.2.1.1.0) Table 116. Data table used for plots. Data for all pooled samples. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.3.1.2.4.2.2.2.1.1.0-3237493bbb7.1.3.1.2.4.2.2.2.1.1.csv

.record.id feature abundance.diff
MG1 Bacteroidales 5.694e-01
MG10 Bacteroidales 2.210e-01
MG13 Bacteroidales 4.176e-02
MG14 Bacteroidales 2.579e-01
MG16 Bacteroidales 1.408e-01
MG17 Bacteroidales -4.393e-01
MG19 Bacteroidales 3.266e-01
MG2 Bacteroidales -3.368e-01
MG21 Bacteroidales 1.304e-01
MG22 Bacteroidales 1.692e-02
MG23 Bacteroidales 5.346e-01
MG25 Bacteroidales 6.182e-02
MG3 Bacteroidales 7.944e-02
MG4 Bacteroidales 6.680e-02
MG6 Bacteroidales 1.154e-01
MG8 Bacteroidales 2.246e-01
MG1 Clostridiales -2.915e-01
MG10 Clostridiales -1.404e-01
MG13 Clostridiales -2.483e-02
MG14 Clostridiales -2.971e-01
MG16 Clostridiales -9.783e-02
MG17 Clostridiales 3.086e-01
MG19 Clostridiales -3.525e-01
MG2 Clostridiales -1.849e-01
MG21 Clostridiales -1.655e-01
MG22 Clostridiales -1.958e-01
MG23 Clostridiales -4.626e-01
MG25 Clostridiales -1.163e-01
MG3 Clostridiales -8.672e-02
MG4 Clostridiales 7.365e-02
MG6 Clostridiales -1.283e-01
MG8 Clostridiales -2.580e-01
MG1 Erysipelotrichales 1.374e-03
MG10 Erysipelotrichales -9.093e-04
MG13 Erysipelotrichales -3.126e-03
MG14 Erysipelotrichales 5.022e-03
MG16 Erysipelotrichales 2.380e-03
MG17 Erysipelotrichales -1.039e-02
MG19 Erysipelotrichales -7.424e-03
MG2 Erysipelotrichales 3.762e-01
MG21 Erysipelotrichales 7.348e-03
MG22 Erysipelotrichales 1.665e-02
MG23 Erysipelotrichales -4.800e-02
MG25 Erysipelotrichales -2.063e-03
MG3 Erysipelotrichales -1.602e-03
MG4 Erysipelotrichales 7.549e-03
MG6 Erysipelotrichales 5.720e-03
MG8 Erysipelotrichales -7.743e-03
MG1 Lactobacillales -1.124e-01
MG10 Lactobacillales 1.378e-03
MG13 Lactobacillales 9.398e-05
MG14 Lactobacillales -1.124e-03
MG16 Lactobacillales 1.297e-03
MG17 Lactobacillales 2.150e-02
MG19 Lactobacillales -2.955e-03
MG2 Lactobacillales 1.891e-01
MG21 Lactobacillales -7.635e-04
MG22 Lactobacillales 4.474e-03
MG23 Lactobacillales 6.028e-04
MG25 Lactobacillales 3.805e-04
MG3 Lactobacillales -1.986e-04
MG4 Lactobacillales -7.297e-02
MG6 Lactobacillales -2.131e-03
MG8 Lactobacillales 2.950e-03
MG1 Selenomonadales -1.828e-01
MG10 Selenomonadales 0.000e+00
MG13 Selenomonadales -3.839e-03
MG14 Selenomonadales 2.354e-03
MG16 Selenomonadales -1.897e-04
MG17 Selenomonadales 1.377e-02
MG19 Selenomonadales 1.827e-04
MG2 Selenomonadales -1.036e-03
MG21 Selenomonadales 1.117e-02
MG22 Selenomonadales 5.574e-03
MG23 Selenomonadales -5.095e-04
MG25 Selenomonadales -2.714e-03
MG3 Selenomonadales -9.321e-03
MG4 Selenomonadales -8.553e-02
MG6 Selenomonadales -1.022e-02
MG8 Selenomonadales -1.237e-03
MG1 Enterobacteriales -1.761e-03
MG10 Enterobacteriales -4.546e-04
MG13 Enterobacteriales -1.498e-03
MG14 Enterobacteriales 8.659e-05
MG16 Enterobacteriales 2.690e-03
MG17 Enterobacteriales 1.456e-01
MG19 Enterobacteriales 0.000e+00
MG2 Enterobacteriales 2.993e-03
MG21 Enterobacteriales 4.344e-06
MG22 Enterobacteriales -3.570e-04
MG23 Enterobacteriales -4.401e-04
MG25 Enterobacteriales 0.000e+00
MG3 Enterobacteriales 0.000e+00
MG4 Enterobacteriales -2.980e-05
MG6 Enterobacteriales -4.435e-03
MG8 Enterobacteriales -6.593e-04
MG1 Burkholderiales -8.936e-04
MG10 Burkholderiales -1.161e-01
MG13 Burkholderiales 3.395e-03
MG14 Burkholderiales 1.385e-02
MG16 Burkholderiales -2.469e-02
MG17 Burkholderiales -3.361e-02
MG19 Burkholderiales -1.612e-03
MG2 Burkholderiales -4.045e-03
MG21 Burkholderiales 2.957e-02
MG22 Burkholderiales 3.011e-03
MG23 Burkholderiales 7.416e-03
MG25 Burkholderiales 5.561e-02
MG3 Burkholderiales -1.736e-03
MG4 Burkholderiales 7.055e-03
MG6 Burkholderiales 3.165e-03
MG8 Burkholderiales -4.272e-03
MG1 Unclassified_Bacteria -1.184e-02
MG10 Unclassified_Bacteria -1.364e-02
MG13 Unclassified_Bacteria -1.100e-03
MG14 Unclassified_Bacteria -5.432e-03
MG16 Unclassified_Bacteria -2.259e-03
MG17 Unclassified_Bacteria -5.929e-03
MG19 Unclassified_Bacteria -1.386e-02
MG2 Unclassified_Bacteria -3.410e-02
MG21 Unclassified_Bacteria -1.594e-02
MG22 Unclassified_Bacteria -7.447e-03
MG23 Unclassified_Bacteria 9.991e-03
MG25 Unclassified_Bacteria -1.314e-03
MG3 Unclassified_Bacteria 1.327e-04
MG4 Unclassified_Bacteria -9.981e-03
MG6 Unclassified_Bacteria 3.134e-03
MG8 Unclassified_Bacteria -1.927e-03
MG1 Bifidobacteriales -3.434e-02
MG10 Bifidobacteriales -6.820e-04
MG13 Bifidobacteriales 6.071e-05
MG14 Bifidobacteriales 6.061e-04
MG16 Bifidobacteriales 3.363e-04
MG17 Bifidobacteriales -7.897e-05
MG19 Bifidobacteriales -3.932e-03
MG2 Bifidobacteriales 6.897e-04
MG21 Bifidobacteriales -3.729e-03
MG22 Bifidobacteriales 2.058e-02
MG23 Bifidobacteriales -7.042e-03
MG25 Bifidobacteriales -2.192e-03
MG3 Bifidobacteriales -8.040e-04
MG4 Bifidobacteriales -4.341e-04
MG6 Bifidobacteriales -2.131e-04
MG8 Bifidobacteriales -5.633e-03
MG1 Verrucomicrobiales 0.000e+00
MG10 Verrucomicrobiales 8.029e-04
MG13 Verrucomicrobiales 0.000e+00
MG14 Verrucomicrobiales 0.000e+00
MG16 Verrucomicrobiales 0.000e+00
MG17 Verrucomicrobiales 0.000e+00
MG19 Verrucomicrobiales -2.686e-04
MG2 Verrucomicrobiales 0.000e+00
MG21 Verrucomicrobiales -7.218e-03
MG22 Verrucomicrobiales 1.568e-01
MG23 Verrucomicrobiales -2.129e-03
MG25 Verrucomicrobiales -3.868e-04
MG3 Verrucomicrobiales 8.853e-05
MG4 Verrucomicrobiales 0.000e+00
MG6 Verrucomicrobiales 7.976e-03
MG8 Verrucomicrobiales 0.000e+00
MG1 Unclassified_Firmicutes -3.184e-03
MG10 Unclassified_Firmicutes -1.023e-02
MG13 Unclassified_Firmicutes -1.635e-03
MG14 Unclassified_Firmicutes -2.556e-03
MG16 Unclassified_Firmicutes -2.289e-02
MG17 Unclassified_Firmicutes -8.492e-04
MG19 Unclassified_Firmicutes -1.697e-03
MG2 Unclassified_Firmicutes 2.682e-03
MG21 Unclassified_Firmicutes -2.143e-03
MG22 Unclassified_Firmicutes 1.470e-03
MG23 Unclassified_Firmicutes -7.181e-03
MG25 Unclassified_Firmicutes -3.610e-03
MG3 Unclassified_Firmicutes -6.520e-04
MG4 Unclassified_Firmicutes -1.133e-03
MG6 Unclassified_Firmicutes -3.361e-03
MG8 Unclassified_Firmicutes -1.448e-03
MG1 Rhizobiales 4.989e-05
MG10 Rhizobiales -1.137e-03
MG13 Rhizobiales 2.603e-04
MG14 Rhizobiales -4.867e-03
MG16 Rhizobiales -2.099e-03
MG17 Rhizobiales -1.370e-02
MG19 Rhizobiales 0.000e+00
MG2 Rhizobiales -8.569e-03
MG21 Rhizobiales -1.056e-02
MG22 Rhizobiales -7.362e-03
MG23 Rhizobiales 0.000e+00
MG25 Rhizobiales -6.865e-03
MG3 Rhizobiales -4.534e-03
MG4 Rhizobiales -6.895e-05
MG6 Rhizobiales -4.049e-03
MG8 Rhizobiales -1.164e-03

(1.3.1.2.4.2.2.2.1.1.1) Widget 126. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data for all pooled samples. Click to see HTML widget file in full window: ./1.3.1.2.4.2.2.2.1.1.1-3231440d9fdDynamic.Pivot.Table.html

(1.3.1.2.4.2.2.2.1.1.1) Widget 127. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data for all pooled samples. Click to see HTML widget file in full window: ./1.3.1.2.4.2.2.2.1.1.1-32335383639Dynamic.Pivot.Table.html

(1.3.1.2.4.2.2.2.1.1.1) Table 117. Summary table. Data for all pooled samples. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.3.1.2.4.2.2.2.1.1.1-3233fb85d6a.1.3.1.2.4.2.2.2.1.1.csv

feature mean sd median incidence
Clostridiales -0.151256 0.178884 -0.1529297 0.1250
Unclassified_Firmicutes -0.003651 0.005955 -0.0019201 0.1250
Unclassified_Bacteria -0.006970 0.009998 -0.0056804 0.1875
Rhizobiales -0.004042 0.004324 -0.0030741 0.1250
Bacteroidales 0.125702 0.258566 0.1228797 0.8750
Bifidobacteriales -0.002301 0.010443 -0.0005581 0.3125
Selenomonadales -0.016523 0.049623 -0.0007729 0.3125
Erysipelotrichales 0.021311 0.095657 0.0002322 0.5000
Lactobacillales 0.001827 0.060102 0.0002372 0.5625
Burkholderiales -0.003994 0.035875 0.0010586 0.5000
Enterobacteriales 0.008859 0.036503 -0.0000149 0.3125
Verrucomicrobiales 0.009731 0.039328 0.0000000 0.2500

(1.3.1.2.4.2.2.2.1.1.1) Figure 460. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. bar_stacked plot. Image file: plots/32375dee6de.svg.

(1.3.1.2.4.2.2.2.1.1.1) Figure 461. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. bar (sample mean) plot. Image file: plots/3231810ae6b.svg.

(1.3.1.2.4.2.2.2.1.1.1) Figure 462. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/3237abbfdc3.svg.

(1.3.1.2.4.2.2.2.1.1.1) Figure 463. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/323573df9c0.svg.

(1.3.1.2.4.2.2.2.1.2) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.3.1.2.4.2.2.2.1.2.1) Figure 464. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. bar (sample mean) plot. Image file: plots/3235e328e05.svg.

(1.3.1.2.4.2.2.2.1.2.1) Figure 465. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/323ebbbb11.svg.

(1.3.1.2.4.2.2.2.1.2.1) Figure 466. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/3237d76adc.svg.

(1.3.1.2.4.2.3) Grouping variables age.quant
(1.3.1.2.4.2.4) Iterating over Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. profile sorting order
(1.3.1.2.4.2.4.1) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. profile sorting order: GeneSelector paired test ranking
(1.3.1.2.4.2.4.2) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.3.1.2.4.2.4.2.1) faceted plots. Iterating over orientation and, optionally, scaling
(1.3.1.2.4.2.4.2.1.1) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.3.1.2.4.2.4.2.1.1.0) Table 118. Data table used for plots. Data grouped by age.quant. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.3.1.2.4.2.4.2.1.1.0-32364dfc918.1.3.1.2.4.2.4.2.1.1.csv

.record.id age.quant feature abundance.diff
MG1 (15.3,26.4] Bacteroidales 5.694e-01
MG10 (8.71,15.3] Bacteroidales 2.210e-01
MG13 (15.3,26.4] Bacteroidales 4.176e-02
MG14 (15.3,26.4] Bacteroidales 2.579e-01
MG16 (15.3,26.4] Bacteroidales 1.408e-01
MG17 (15.3,26.4] Bacteroidales -4.393e-01
MG19 (6.27,8.71] Bacteroidales 3.266e-01
MG2 [3.18,6.27] Bacteroidales -3.368e-01
MG21 (8.71,15.3] Bacteroidales 1.304e-01
MG22 (8.71,15.3] Bacteroidales 1.692e-02
MG23 (6.27,8.71] Bacteroidales 5.346e-01
MG25 (8.71,15.3] Bacteroidales 6.182e-02
MG3 (8.71,15.3] Bacteroidales 7.944e-02
MG4 (8.71,15.3] Bacteroidales 6.680e-02
MG6 (8.71,15.3] Bacteroidales 1.154e-01
MG8 (8.71,15.3] Bacteroidales 2.246e-01
MG1 (15.3,26.4] Clostridiales -2.915e-01
MG10 (8.71,15.3] Clostridiales -1.404e-01
MG13 (15.3,26.4] Clostridiales -2.483e-02
MG14 (15.3,26.4] Clostridiales -2.971e-01
MG16 (15.3,26.4] Clostridiales -9.783e-02
MG17 (15.3,26.4] Clostridiales 3.086e-01
MG19 (6.27,8.71] Clostridiales -3.525e-01
MG2 [3.18,6.27] Clostridiales -1.849e-01
MG21 (8.71,15.3] Clostridiales -1.655e-01
MG22 (8.71,15.3] Clostridiales -1.958e-01
MG23 (6.27,8.71] Clostridiales -4.626e-01
MG25 (8.71,15.3] Clostridiales -1.163e-01
MG3 (8.71,15.3] Clostridiales -8.672e-02
MG4 (8.71,15.3] Clostridiales 7.365e-02
MG6 (8.71,15.3] Clostridiales -1.283e-01
MG8 (8.71,15.3] Clostridiales -2.580e-01
MG1 (15.3,26.4] Erysipelotrichales 1.374e-03
MG10 (8.71,15.3] Erysipelotrichales -9.093e-04
MG13 (15.3,26.4] Erysipelotrichales -3.126e-03
MG14 (15.3,26.4] Erysipelotrichales 5.022e-03
MG16 (15.3,26.4] Erysipelotrichales 2.380e-03
MG17 (15.3,26.4] Erysipelotrichales -1.039e-02
MG19 (6.27,8.71] Erysipelotrichales -7.424e-03
MG2 [3.18,6.27] Erysipelotrichales 3.762e-01
MG21 (8.71,15.3] Erysipelotrichales 7.348e-03
MG22 (8.71,15.3] Erysipelotrichales 1.665e-02
MG23 (6.27,8.71] Erysipelotrichales -4.800e-02
MG25 (8.71,15.3] Erysipelotrichales -2.063e-03
MG3 (8.71,15.3] Erysipelotrichales -1.602e-03
MG4 (8.71,15.3] Erysipelotrichales 7.549e-03
MG6 (8.71,15.3] Erysipelotrichales 5.720e-03
MG8 (8.71,15.3] Erysipelotrichales -7.743e-03
MG1 (15.3,26.4] Lactobacillales -1.124e-01
MG10 (8.71,15.3] Lactobacillales 1.378e-03
MG13 (15.3,26.4] Lactobacillales 9.398e-05
MG14 (15.3,26.4] Lactobacillales -1.124e-03
MG16 (15.3,26.4] Lactobacillales 1.297e-03
MG17 (15.3,26.4] Lactobacillales 2.150e-02
MG19 (6.27,8.71] Lactobacillales -2.955e-03
MG2 [3.18,6.27] Lactobacillales 1.891e-01
MG21 (8.71,15.3] Lactobacillales -7.635e-04
MG22 (8.71,15.3] Lactobacillales 4.474e-03
MG23 (6.27,8.71] Lactobacillales 6.028e-04
MG25 (8.71,15.3] Lactobacillales 3.805e-04
MG3 (8.71,15.3] Lactobacillales -1.986e-04
MG4 (8.71,15.3] Lactobacillales -7.297e-02
MG6 (8.71,15.3] Lactobacillales -2.131e-03
MG8 (8.71,15.3] Lactobacillales 2.950e-03
MG1 (15.3,26.4] Selenomonadales -1.828e-01
MG10 (8.71,15.3] Selenomonadales 0.000e+00
MG13 (15.3,26.4] Selenomonadales -3.839e-03
MG14 (15.3,26.4] Selenomonadales 2.354e-03
MG16 (15.3,26.4] Selenomonadales -1.897e-04
MG17 (15.3,26.4] Selenomonadales 1.377e-02
MG19 (6.27,8.71] Selenomonadales 1.827e-04
MG2 [3.18,6.27] Selenomonadales -1.036e-03
MG21 (8.71,15.3] Selenomonadales 1.117e-02
MG22 (8.71,15.3] Selenomonadales 5.574e-03
MG23 (6.27,8.71] Selenomonadales -5.095e-04
MG25 (8.71,15.3] Selenomonadales -2.714e-03
MG3 (8.71,15.3] Selenomonadales -9.321e-03
MG4 (8.71,15.3] Selenomonadales -8.553e-02
MG6 (8.71,15.3] Selenomonadales -1.022e-02
MG8 (8.71,15.3] Selenomonadales -1.237e-03
MG1 (15.3,26.4] Enterobacteriales -1.761e-03
MG10 (8.71,15.3] Enterobacteriales -4.546e-04
MG13 (15.3,26.4] Enterobacteriales -1.498e-03
MG14 (15.3,26.4] Enterobacteriales 8.659e-05
MG16 (15.3,26.4] Enterobacteriales 2.690e-03
MG17 (15.3,26.4] Enterobacteriales 1.456e-01
MG19 (6.27,8.71] Enterobacteriales 0.000e+00
MG2 [3.18,6.27] Enterobacteriales 2.993e-03
MG21 (8.71,15.3] Enterobacteriales 4.344e-06
MG22 (8.71,15.3] Enterobacteriales -3.570e-04
MG23 (6.27,8.71] Enterobacteriales -4.401e-04
MG25 (8.71,15.3] Enterobacteriales 0.000e+00
MG3 (8.71,15.3] Enterobacteriales 0.000e+00
MG4 (8.71,15.3] Enterobacteriales -2.980e-05
MG6 (8.71,15.3] Enterobacteriales -4.435e-03
MG8 (8.71,15.3] Enterobacteriales -6.593e-04
MG1 (15.3,26.4] Burkholderiales -8.936e-04
MG10 (8.71,15.3] Burkholderiales -1.161e-01
MG13 (15.3,26.4] Burkholderiales 3.395e-03
MG14 (15.3,26.4] Burkholderiales 1.385e-02
MG16 (15.3,26.4] Burkholderiales -2.469e-02
MG17 (15.3,26.4] Burkholderiales -3.361e-02
MG19 (6.27,8.71] Burkholderiales -1.612e-03
MG2 [3.18,6.27] Burkholderiales -4.045e-03
MG21 (8.71,15.3] Burkholderiales 2.957e-02
MG22 (8.71,15.3] Burkholderiales 3.011e-03
MG23 (6.27,8.71] Burkholderiales 7.416e-03
MG25 (8.71,15.3] Burkholderiales 5.561e-02
MG3 (8.71,15.3] Burkholderiales -1.736e-03
MG4 (8.71,15.3] Burkholderiales 7.055e-03
MG6 (8.71,15.3] Burkholderiales 3.165e-03
MG8 (8.71,15.3] Burkholderiales -4.272e-03
MG1 (15.3,26.4] Unclassified_Bacteria -1.184e-02
MG10 (8.71,15.3] Unclassified_Bacteria -1.364e-02
MG13 (15.3,26.4] Unclassified_Bacteria -1.100e-03
MG14 (15.3,26.4] Unclassified_Bacteria -5.432e-03
MG16 (15.3,26.4] Unclassified_Bacteria -2.259e-03
MG17 (15.3,26.4] Unclassified_Bacteria -5.929e-03
MG19 (6.27,8.71] Unclassified_Bacteria -1.386e-02
MG2 [3.18,6.27] Unclassified_Bacteria -3.410e-02
MG21 (8.71,15.3] Unclassified_Bacteria -1.594e-02
MG22 (8.71,15.3] Unclassified_Bacteria -7.447e-03
MG23 (6.27,8.71] Unclassified_Bacteria 9.991e-03
MG25 (8.71,15.3] Unclassified_Bacteria -1.314e-03
MG3 (8.71,15.3] Unclassified_Bacteria 1.327e-04
MG4 (8.71,15.3] Unclassified_Bacteria -9.981e-03
MG6 (8.71,15.3] Unclassified_Bacteria 3.134e-03
MG8 (8.71,15.3] Unclassified_Bacteria -1.927e-03
MG1 (15.3,26.4] Bifidobacteriales -3.434e-02
MG10 (8.71,15.3] Bifidobacteriales -6.820e-04
MG13 (15.3,26.4] Bifidobacteriales 6.071e-05
MG14 (15.3,26.4] Bifidobacteriales 6.061e-04
MG16 (15.3,26.4] Bifidobacteriales 3.363e-04
MG17 (15.3,26.4] Bifidobacteriales -7.897e-05
MG19 (6.27,8.71] Bifidobacteriales -3.932e-03
MG2 [3.18,6.27] Bifidobacteriales 6.897e-04
MG21 (8.71,15.3] Bifidobacteriales -3.729e-03
MG22 (8.71,15.3] Bifidobacteriales 2.058e-02
MG23 (6.27,8.71] Bifidobacteriales -7.042e-03
MG25 (8.71,15.3] Bifidobacteriales -2.192e-03
MG3 (8.71,15.3] Bifidobacteriales -8.040e-04
MG4 (8.71,15.3] Bifidobacteriales -4.341e-04
MG6 (8.71,15.3] Bifidobacteriales -2.131e-04
MG8 (8.71,15.3] Bifidobacteriales -5.633e-03
MG1 (15.3,26.4] Verrucomicrobiales 0.000e+00
MG10 (8.71,15.3] Verrucomicrobiales 8.029e-04
MG13 (15.3,26.4] Verrucomicrobiales 0.000e+00
MG14 (15.3,26.4] Verrucomicrobiales 0.000e+00
MG16 (15.3,26.4] Verrucomicrobiales 0.000e+00
MG17 (15.3,26.4] Verrucomicrobiales 0.000e+00
MG19 (6.27,8.71] Verrucomicrobiales -2.686e-04
MG2 [3.18,6.27] Verrucomicrobiales 0.000e+00
MG21 (8.71,15.3] Verrucomicrobiales -7.218e-03
MG22 (8.71,15.3] Verrucomicrobiales 1.568e-01
MG23 (6.27,8.71] Verrucomicrobiales -2.129e-03
MG25 (8.71,15.3] Verrucomicrobiales -3.868e-04
MG3 (8.71,15.3] Verrucomicrobiales 8.853e-05
MG4 (8.71,15.3] Verrucomicrobiales 0.000e+00
MG6 (8.71,15.3] Verrucomicrobiales 7.976e-03
MG8 (8.71,15.3] Verrucomicrobiales 0.000e+00
MG1 (15.3,26.4] Unclassified_Firmicutes -3.184e-03
MG10 (8.71,15.3] Unclassified_Firmicutes -1.023e-02
MG13 (15.3,26.4] Unclassified_Firmicutes -1.635e-03
MG14 (15.3,26.4] Unclassified_Firmicutes -2.556e-03
MG16 (15.3,26.4] Unclassified_Firmicutes -2.289e-02
MG17 (15.3,26.4] Unclassified_Firmicutes -8.492e-04
MG19 (6.27,8.71] Unclassified_Firmicutes -1.697e-03
MG2 [3.18,6.27] Unclassified_Firmicutes 2.682e-03
MG21 (8.71,15.3] Unclassified_Firmicutes -2.143e-03
MG22 (8.71,15.3] Unclassified_Firmicutes 1.470e-03
MG23 (6.27,8.71] Unclassified_Firmicutes -7.181e-03
MG25 (8.71,15.3] Unclassified_Firmicutes -3.610e-03
MG3 (8.71,15.3] Unclassified_Firmicutes -6.520e-04
MG4 (8.71,15.3] Unclassified_Firmicutes -1.133e-03
MG6 (8.71,15.3] Unclassified_Firmicutes -3.361e-03
MG8 (8.71,15.3] Unclassified_Firmicutes -1.448e-03
MG1 (15.3,26.4] Rhizobiales 4.989e-05
MG10 (8.71,15.3] Rhizobiales -1.137e-03
MG13 (15.3,26.4] Rhizobiales 2.603e-04
MG14 (15.3,26.4] Rhizobiales -4.867e-03
MG16 (15.3,26.4] Rhizobiales -2.099e-03
MG17 (15.3,26.4] Rhizobiales -1.370e-02
MG19 (6.27,8.71] Rhizobiales 0.000e+00
MG2 [3.18,6.27] Rhizobiales -8.569e-03
MG21 (8.71,15.3] Rhizobiales -1.056e-02
MG22 (8.71,15.3] Rhizobiales -7.362e-03
MG23 (6.27,8.71] Rhizobiales 0.000e+00
MG25 (8.71,15.3] Rhizobiales -6.865e-03
MG3 (8.71,15.3] Rhizobiales -4.534e-03
MG4 (8.71,15.3] Rhizobiales -6.895e-05
MG6 (8.71,15.3] Rhizobiales -4.049e-03
MG8 (8.71,15.3] Rhizobiales -1.164e-03

(1.3.1.2.4.2.4.2.1.1.1) Widget 128. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by age.quant. Click to see HTML widget file in full window: ./1.3.1.2.4.2.4.2.1.1.1-32346a68129Dynamic.Pivot.Table.html

(1.3.1.2.4.2.4.2.1.1.1) Widget 129. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by age.quant. Click to see HTML widget file in full window: ./1.3.1.2.4.2.4.2.1.1.1-3235787daf6Dynamic.Pivot.Table.html

(1.3.1.2.4.2.4.2.1.1.1) Table 119. Summary table. Data grouped by age.quant. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.3.1.2.4.2.4.2.1.1.1-323183ac049.1.3.1.2.4.2.4.2.1.1.csv

feature age.quant mean sd median incidence
Clostridiales [3.18,6.27] -0.1848539 NA -1.849e-01 0.000
Clostridiales (6.27,8.71] -0.4075630 0.0778220 -4.076e-01 0.000
Clostridiales (8.71,15.3] -0.1271761 0.0967787 -1.343e-01 0.125
Clostridiales (15.3,26.4] -0.0805399 0.2481007 -9.783e-02 0.200
Unclassified_Firmicutes [3.18,6.27] 0.0026824 NA 2.682e-03 1.000
Unclassified_Firmicutes (6.27,8.71] -0.0044392 0.0038774 -4.439e-03 0.000
Unclassified_Firmicutes (8.71,15.3] -0.0026382 0.0034609 -1.796e-03 0.125
Unclassified_Firmicutes (15.3,26.4] -0.0062235 0.0093606 -2.556e-03 0.000
Unclassified_Bacteria [3.18,6.27] -0.0341026 NA -3.410e-02 0.000
Unclassified_Bacteria (6.27,8.71] -0.0019366 0.0168680 -1.937e-03 0.500
Unclassified_Bacteria (8.71,15.3] -0.0058734 0.0069142 -4.687e-03 0.250
Unclassified_Bacteria (15.3,26.4] -0.0053124 0.0041868 -5.432e-03 0.000
Rhizobiales [3.18,6.27] -0.0085690 NA -8.569e-03 0.000
Rhizobiales (6.27,8.71] 0.0000000 0.0000000 0.000e+00 0.000
Rhizobiales (8.71,15.3] -0.0044678 0.0036413 -4.292e-03 0.000
Rhizobiales (15.3,26.4] -0.0040717 0.0057674 -2.099e-03 0.400
Bacteroidales [3.18,6.27] -0.3368370 NA -3.368e-01 0.000
Bacteroidales (6.27,8.71] 0.4306140 0.1470472 4.306e-01 1.000
Bacteroidales (8.71,15.3] 0.1145387 0.0751330 9.739e-02 1.000
Bacteroidales (15.3,26.4] 0.1141070 0.3674766 1.408e-01 0.800
Bifidobacteriales [3.18,6.27] 0.0006897 NA 6.897e-04 1.000
Bifidobacteriales (6.27,8.71] -0.0054871 0.0021992 -5.487e-03 0.000
Bifidobacteriales (8.71,15.3] 0.0008611 0.0081871 -7.430e-04 0.125
Bifidobacteriales (15.3,26.4] -0.0066836 0.0154639 6.071e-05 0.600
Selenomonadales [3.18,6.27] -0.0010363 NA -1.036e-03 0.000
Selenomonadales (6.27,8.71] -0.0001634 0.0004895 -1.634e-04 0.500
Selenomonadales (8.71,15.3] -0.0115346 0.0307222 -1.975e-03 0.250
Selenomonadales (15.3,26.4] -0.0341447 0.0833706 -1.897e-04 0.400
Erysipelotrichales [3.18,6.27] 0.3761952 NA 3.762e-01 1.000
Erysipelotrichales (6.27,8.71] -0.0277115 0.0286911 -2.771e-02 0.000
Erysipelotrichales (8.71,15.3] 0.0031193 0.0076611 2.405e-03 0.500
Erysipelotrichales (15.3,26.4] -0.0009487 0.0060426 1.374e-03 0.600
Lactobacillales [3.18,6.27] 0.1891178 NA 1.891e-01 1.000
Lactobacillales (6.27,8.71] -0.0011759 0.0025155 -1.176e-03 0.500
Lactobacillales (8.71,15.3] -0.0083604 0.0261909 9.096e-05 0.500
Lactobacillales (15.3,26.4] -0.0181297 0.0535234 9.398e-05 0.600
Burkholderiales [3.18,6.27] -0.0040454 NA -4.045e-03 0.000
Burkholderiales (6.27,8.71] 0.0029020 0.0063832 2.902e-03 0.500
Burkholderiales (8.71,15.3] -0.0029648 0.0499617 3.088e-03 0.625
Burkholderiales (15.3,26.4] -0.0083880 0.0199463 -8.936e-04 0.400
Enterobacteriales [3.18,6.27] 0.0029933 NA 2.993e-03 1.000
Enterobacteriales (6.27,8.71] -0.0002201 0.0003112 -2.201e-04 0.000
Enterobacteriales (8.71,15.3] -0.0007415 0.0015139 -1.934e-04 0.125
Enterobacteriales (15.3,26.4] 0.0290239 0.0651933 8.659e-05 0.600
Verrucomicrobiales [3.18,6.27] 0.0000000 NA 0.000e+00 0.000
Verrucomicrobiales (6.27,8.71] -0.0011986 0.0013153 -1.199e-03 0.000
Verrucomicrobiales (8.71,15.3] 0.0197609 0.0555318 4.426e-05 0.500
Verrucomicrobiales (15.3,26.4] 0.0000000 0.0000000 0.000e+00 0.000

(1.3.1.2.4.2.4.2.1.1.1) Figure 467. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar_stacked plot. Image file: plots/3231e66f078.svg.

(1.3.1.2.4.2.4.2.1.1.1) Figure 468. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar (sample mean) plot. Image file: plots/32310ea3648.svg.

(1.3.1.2.4.2.4.2.1.1.1) Figure 469. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/32312b9f7b4.svg.

(1.3.1.2.4.2.4.2.1.1.1) Figure 470. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/323578d4481.svg.

(1.3.1.2.4.2.4.2.1.2) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.3.1.2.4.2.4.2.1.2.1) Figure 471. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar (sample mean) plot. Image file: plots/32319b72b44.svg.

(1.3.1.2.4.2.4.2.1.2.1) Figure 472. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/32367b92252.svg.

(1.3.1.2.4.2.4.2.1.2.1) Figure 473. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/3237ca21f10.svg.

(1.3.1.2.4.2.4.2.2) dodged plots. Iterating over orientation and, optionally, scaling
(1.3.1.2.4.2.4.2.2.1) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.3.1.2.4.2.4.2.2.1.1) Figure 474. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar (sample mean) plot. Image file: plots/32358f97365.svg.

(1.3.1.2.4.2.4.2.2.1.1) Figure 475. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/3231544160a.svg.

(1.3.1.2.4.2.4.2.2.1.1) Figure 476. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/323491e0793.svg.

(1.3.1.2.4.2.4.2.2.2) Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.3.1.2.4.2.4.2.2.2.1) Figure 477. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar (sample mean) plot. Image file: plots/3234b935654.svg.

(1.3.1.2.4.2.4.2.2.2.1) Figure 478. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/3232916033f.svg.

(1.3.1.2.4.2.4.2.2.2.1) Figure 479. Abundance difference between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/3237919c64.svg.

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